PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0032s0071.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 501aa    MW: 54286 Da    PI: 5.3456
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0032s0071.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1154.7e-36281192102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d++++ ++sws+ +nsfvv++  ef+k++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +gkk
  Kaladp0032s0071.1.p  28 FLSKTYDMVDDASTDGVVSWSSGNNSFVVWNVAEFSKELLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGKK 108
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+r+k 
  Kaladp0032s0071.1.p 109 HLLKTINRRKA 119
                          ********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.8E-5924117IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.1E-3825117IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.26E-3425117IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.9E-192851IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.1E-3128117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-197991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MEGAAAEGGV GGGGPGGGSI GGGLPPPFLS KTYDMVDDAS TDGVVSWSSG NNSFVVWNVA  60
EFSKELLPKY FKHSNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGKKHL LKTINRRKAP  120
HVNSPAPQIQ TAAVGACIEV GKFGLEEEVE RLKRDKNLLM QELVRLKQQQ QSTDHQLQTV  180
GSRVQMMEQR QQQMMSFLAK AMQSPGFMSQ LVQQQNESSR RITNSSKKRR LPNQDEPVFR  240
TYGDRTPDGQ VTKFQPLLNE AAASMLRQIL NMNVSAQRET SLWKPDAFLI DDVSSSLNAF  300
DSGSSSSRLS GVTLAEVTPS SALSPQLEPS FPAKGMCGGV TEVQSPPHLL AAQLQPSKYP  360
ATELLNTGAT SILPDLSDHL GLPKNIVGLP GTSIADTGAK MGSVHPMMLA GDGSPTKSNT  420
ELSDDDGAKL PGIDDVFWEQ FLSTSPLTGE TDEMSSVLDD GIAQELDITS GQEALWNRGQ  480
HVDQLTEQMG LLTSNATIRR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-2531171129Heat shock factor protein 1
5d5v_B3e-2531171129Heat shock factor protein 1
5d5v_D3e-2531171129Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002273949.11e-180PREDICTED: heat stress transcription factor A-1b
SwissprotQ84T611e-158HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLF6HEE61e-180F6HEE6_VITVI; Putative uncharacterized protein
STRINGVIT_16s0039g01840.t011e-180(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.11e-121heat shock transcription factor A1E